PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG317900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 267aa    MW: 28511.5 Da    PI: 7.6427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG317900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07140181955
                          HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           r+RR+ri ++ +eL +l+P         K++ a +Le+A +++k Lq
  Pavir.3KG317900.1.p 140 ARQRRKRISEKTAELSRLIPGgH------KMNTAKMLEEAARHVKLLQ 181
                          69******************955......****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-8137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-8138186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-8139184No hitNo description
PfamPF000105.5E-5140181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSFLQDVHPE VTDALLGFVY DPLDPANAAL DDLLSLPPHD DDDAFLRPIH GDGDGKVERH  60
CAKRQRTCGD GAWRGLARIG AGQQSNGGGN QQVPEPPNEL VLPLPLLPPP QLPEPPALVR  120
VADANKAAGN VSQPVQSTAA RQRRKRISEK TAELSRLIPG GHKMNTAKML EEAARHVKLL  180
QAQVGVLALM RTVGSTDENE KVPSMAQEQM HALLVRGSVQ ERLAAEGKCL VPRKLVDAVA  240
SDSSVKSNAL VSRDLGRFVA SLLAGR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.11e-131PREDICTED: uncharacterized protein LOC101765829
TrEMBLK4AI891e-131K4AI89_SETIT; Uncharacterized protein
STRINGSi038598m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-21bHLH family protein